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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8742308_8743456_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8742308 - 8743456
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCCAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TGTTTCCAAATA
Flanking Amino Acid:
VMGQLLVKPTILEDLDEQMY
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
73.6
0.53
1
67.1
37.3
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
50.7
0.02
2
68.19
38.5

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201