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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8743522_8745866_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8743522 - 8745866
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CCTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAAAT
U12 Branch Point Sequence:
TTTTGTGTAATC
Flanking Amino Acid:
ISLMGCLLLLLCTPVGLSRM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
59.4
0.23
1.2
65.3
38.6
Major PPT
82.5
0.73
0.7
76.7
25.3
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
51.8
0.04
2.3
73.34
38.7

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201