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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8746534_8764891_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8746534 - 8764891
Intron Length:
18358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
ESEGFAGLKKGIRARILETL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
75.1
0.56
0.8
68.5
32
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201