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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87485517_87516935_R

Intron Information:

Intron Rank:
151380
Intron Class:
major
Intron Phase:
Intron Coordinates:
87485517 - 87516935
Intron Length:
31419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATTATCATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.9
0.63
0.9
72.5
37.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
54.4
0.22
1.6
74.59
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028997
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040795
87470182 - 87517696
47515