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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87521246_87539736_R

Intron Information:

Intron Rank:
147893
Intron Class:
major
Intron Phase:
Intron Coordinates:
87521246 - 87539736
Intron Length:
18491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.2
0.9
0.7
85.2
29.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
66.4
0.5
1.6
73.85
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044631
87520751 - 87541175
20425