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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87532426_87534052_R

Intron Information:

Intron Rank:
147897
Intron Class:
major
Intron Phase:
Intron Coordinates:
87532426 - 87534052
Intron Length:
1627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGACTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.75
0.9
74.8
39.9
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
75.1
0.87
1.1
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047786
87520751 - 87536176
15426