About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87534179_87535546_R

Intron Information:

Intron Rank:
147898
Intron Class:
major
Intron Phase:
Intron Coordinates:
87534179 - 87535546
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.6
0.85
0.7
80.8
36.5
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
52.6
0.16
1.9
75.66
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047786
87520751 - 87536176
15426