About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87540545_87540989_R

Intron Information:

Intron Rank:
147895
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
87540545 - 87540989
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAACTGC
5'SS Class:
weak_major
3'SS Sequence:
TTTTACTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.2
50.4
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.8
0.8
0.7
80.9
30.8
Minor 5ss
45.5
-0.5
3
59.1
45.8
Minor BPS
61.4
0.44
1.6
79.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044631
87520751 - 87541175
20425