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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87630861_87630952_R

Intron Information:

Intron Rank:
142742
Intron Class:
major
Intron Phase:
Intron Coordinates:
87630861 - 87630952
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCGTCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
GTGTATTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.2
29.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
65.1
0.34
1
58.8
37.2
Minor 5ss
36.3
-1.5
3
50.7
45.8
Minor BPS
51.7
0.05
1.6
61.87
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020936
87630078 - 87658524
28447