About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87631082_87657914_R

Intron Information:

Intron Rank:
142743
Intron Class:
major
Intron Phase:
Intron Coordinates:
87631082 - 87657914
Intron Length:
26833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTCTTTGAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.7
0.56
1
75.3
33.4
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
63.8
0.29
1.5
67.27
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020936
87630078 - 87658524
28447