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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8771523_8773836_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8771523 - 8773836
Intron Length:
2314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATGTATA
5'SS Class:
weak_major
3'SS Sequence:
CTTTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCTTTAAAT
Flanking Amino Acid:
EDEDAIVNRISLFLSTFTLA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
72.4
38.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
0.9
74.9
38.5
Minor 5ss
46.9
-0.3
2.5
60
39.1
Minor BPS
80.8
1.05
1.2
91.8
30.2

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201