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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_877368_878482_F

Intron Information:

Intron Rank:
132781
Intron Class:
major
Intron Phase:
Intron Coordinates:
877368 - 878482
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTTCCTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.2
0.61
0.8
69.4
35.9
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
76.2
0.8
1.5
82.19
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021395
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032337
876051 - 878615
2565