About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8773877_8776314_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8773877 - 8776314
Intron Length:
2438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
FIITRYKRKADEQEDEDAIV
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
LMBR1
Ensembl Gene ID:
ENSAPLG00000006761
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007078
8726215 - 8790415
64201