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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87756411_87758537_R

Intron Information:

Intron Rank:
133953
Intron Class:
major
Intron Phase:
Intron Coordinates:
87756411 - 87758537
Intron Length:
2127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTGTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.3
0.75
0.9
74.4
40.4
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
55.6
0.25
2
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024818
87756379 - 87764516
8138