About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87758601_87761564_R

Intron Information:

Intron Rank:
133954
Intron Class:
major
Intron Phase:
Intron Coordinates:
87758601 - 87761564
Intron Length:
2964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGAA
5'SS Class:
major
3'SS Sequence:
TTTTCCTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCTCTGAGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64
36.2
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
75.5
0.57
0.9
69.8
36.6
Minor 5ss
41.4
-1
3.3
55.5
48.7
Minor BPS
43.6
-0.4
2.3
66.84
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019339
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024818
87756379 - 87764516
8138