Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87761763_87764465_R

Intron Information:

Intron Rank:

133955

Intron Class:

major

Intron Phase:

Intron Coordinates:

87761763 - 87764465

Intron Length:

2703

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TAG|GCAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.2

1.14

0.7

86.9

30.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.95

0.7

84.8

35.4

Minor 5ss

32.5

-2

3.9

50.4

Minor BPS

65.4

0.56

1.5

80.16

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024818

87756379 - 87764516

8138

ENSAPLT00000041703

87756379 - 87764516

8138