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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87809093_87820819_F

Intron Information:

Intron Rank:
128831
Intron Class:
major
Intron Phase:
Intron Coordinates:
87809093 - 87820819
Intron Length:
11727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTACATACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
67.8
37.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
39.8
-1.1
3.1
48.4
42.2
Minor BPS
46.8
-0.3
2.2
62.93
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021157
87808974 - 87831148
22175