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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87820864_87830557_F

Intron Information:

Intron Rank:
128832
Intron Class:
major
Intron Phase:
Intron Coordinates:
87820864 - 87830557
Intron Length:
9694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTATATCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.5
0.42
0.9
62.3
37.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
70.8
0.65
1.5
81.76
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021157
87808974 - 87831148
22175