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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87978072_87996165_R

Intron Information:

Intron Rank:
132594
Intron Class:
major
Intron Phase:
Intron Coordinates:
87978072 - 87996165
Intron Length:
18094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
64.8
41.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
48.5
-0.2
2.4
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018577
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029662
87977990 - 88000805
22816