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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_87996299_88000411_R

Intron Information:

Intron Rank:
132595
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
87996299 - 88000411
Intron Length:
4113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAAA
5'SS Class:
major
3'SS Sequence:
CTTGCAAGAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTGCAA
U12 Branch Point Sequence:
GTGCTTGCAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
75.4
28.5
Major BPS
53.5
0.09
1.4
67
39.8
Major PPT
53.8
0.09
1
49.2
38.2
Minor 5ss
26.7
-2.7
2.8
30.6
42.8
Minor BPS
37.4
-0.9
2.1
44.68
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018577
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029662
87977990 - 88000805
22816