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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88016356_88024424_F

Intron Information:

Intron Rank:
128706
Intron Class:
major
Intron Phase:
Intron Coordinates:
88016356 - 88024424
Intron Length:
8069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
86.9
30.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.6
0.62
1
73.6
36
Minor 5ss
39.9
-1.1
3.1
56.9
47.4
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019277
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041917
88014110 - 88024717
10608
ENSAPLT00000040380
88014110 - 88024717
10608
ENSAPLT00000025377
88015449 - 88024717
9269