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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88031857_88042855_F

Intron Information:

Intron Rank:
139702
Intron Class:
major
Intron Phase:
Intron Coordinates:
88031857 - 88042855
Intron Length:
10999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
GGTTTCACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
75
0.56
1.7
88.7
28.3
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
50.2
0.08
1.8
70.72
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025114
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019095
88031747 - 88043486
11740