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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88061601_88084730_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88061601 - 88084730
Intron Length:
23130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGGAG
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATGTTCTGAATT
Flanking Amino Acid:
LRSPTSEEKELDDCTLQLSH
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55
44.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.8
0.83
0.7
80.9
31.3
Minor 5ss
33
-1.9
3.7
46
49.3
Minor BPS
67.1
0.62
1.4
78.77
37.7

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018785
88061361 - 88431643
370283