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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88084838_88100336_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88084838 - 88100336
Intron Length:
15499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCTACT
Flanking Amino Acid:
DELEGFQEDAGRGKKHSIIL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
74.1
38.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87
0.83
0.7
84.6
29.8
Minor 5ss
33.1
-1.9
2.8
32.9
41.9
Minor BPS
66.3
0.59
1.9
88.46
36.4

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018785
88061361 - 88431643
370283
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000018287
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000037591
88053543 - 88431643
378101