Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88100402 - 88227994

Intron Length:

127593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

AACTTCCTATTG

Flanking Amino Acid:

QLSVRVHACIEKLYNSNGRE

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

31.9

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

1.01

0.6

88.4

28.7

Minor 5ss

32.5

-2

3.2

40.8

45.4

Minor BPS

44.5

-0.5

1.9

46.95

40.4

Associated Gene:

Gene:

FHOD3

Ensembl Gene ID:

ENSAPLG00000006413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026769

88053543 - 88431643

378101

ENSAPLT00000037591

88053543 - 88431643

378101

ENSAPLT00000036378

88053543 - 88431643

378101

ENSAPLT00000018785

88061361 - 88431643

370283

ENSAPLT00000033509

88053543 - 88431643

378101

ENSAPLT00000047318

88053543 - 88431643

378101

ENSAPLT00000018287

88053543 - 88431643

378101

ENSAPLT00000032874

88053543 - 88431643

378101

ENSAPLT00000040092

88053543 - 88418019

364477

ENSAPLT00000006656

88053543 - 88431643

378101

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88100402_88227994_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: