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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8817789_8818923_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8817789 - 8818923
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
GAACTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTCCTTAATG
Flanking Amino Acid:
SVLHHTVGIEVGAHFLEAVV
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
62.5
0.28
1.1
54.5
45.3
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
89
1.09
1
87.41
29.8

Associated Gene:

Gene:
NOM1
Ensembl Gene ID:
ENSAPLG00000006585
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006858
8814835 - 8830339
15505