About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8819248_8819743_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8819248 - 8819743
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTG
5'SS Class:
major
3'SS Sequence:
CTTTTCCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTTCCTGATAG
Flanking Amino Acid:
AEKNFKDQTRVRFMLETMLA
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
75.7
0.58
0.9
73
32
Minor 5ss
41.9
-0.9
3.1
49
47.2
Minor BPS
57.5
0.1
1.9
69.97
42.7

Associated Gene:

Gene:
NOM1
Ensembl Gene ID:
ENSAPLG00000006585
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006858
8814835 - 8830339
15505