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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8821242_8821729_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8821242 - 8821729
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTCTCTTTAAGA
Flanking Amino Acid:
KTQQKLHIGKVSSKIIELAR
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
64.9
0.46
1.7
70.26
42.8

Associated Gene:

Gene:
NOM1
Ensembl Gene ID:
ENSAPLG00000006585
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006858
8814835 - 8830339
15505