Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88228063 - 88245806

Intron Length:

17744

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

AGAATTCTAACA

Flanking Amino Acid:

ALFSLKQIFQDDKDLVHEFV

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.8

79.3

31.1

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

75.3

0.57

72.4

37.7

Minor 5ss

33.2

-1.9

2.8

46.4

Minor BPS

48.2

-0.1

1.6

56.75

35.7

Associated Gene:

Gene:

FHOD3

Ensembl Gene ID:

ENSAPLG00000006413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032874

88053543 - 88431643

378101

ENSAPLT00000040092

88053543 - 88418019

364477

ENSAPLT00000006656

88053543 - 88431643

378101

ENSAPLT00000026769

88053543 - 88431643

378101

ENSAPLT00000037591

88053543 - 88431643

378101

ENSAPLT00000018785

88061361 - 88431643

370283

ENSAPLT00000036378

88053543 - 88431643

378101

ENSAPLT00000033509

88053543 - 88431643

378101

ENSAPLT00000047318

88053543 - 88431643

378101

ENSAPLT00000018287

88053543 - 88431643

378101

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88228063_88245806_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: