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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8826954_8828083_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8826954 - 8828083
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TGTGTTTTTACA
Flanking Amino Acid:
DAEDVGDIFGRISDNPKLGT
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
85.7
0.8
0.8
79.9
37.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
54.4
0.13
1.7
66.95
39.5

Associated Gene:

Gene:
NOM1
Ensembl Gene ID:
ENSAPLG00000006585
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006858
8814835 - 8830339
15505