Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88323350 - 88326900

Intron Length:

3551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACATAA

5'SS Class:

major

3'SS Sequence:

CTTTCCTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAG

U12 Branch Point Sequence:

CATATCAGAAGC

Flanking Amino Acid:

DLVEQFNIYEVTLRHEDGDE

Intron Amino Acid Position:

320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

73.9

32.9

Major BPS

55.5

0.14

1.5

65.8

Major PPT

82.8

0.74

0.7

80.9

24.2

Minor 5ss

42.8

-0.8

2.9

48.2

Minor BPS

41.9

-0.6

1.9

49.79

40.1

Associated Gene:

Gene:

FHOD3

Ensembl Gene ID:

ENSAPLG00000006413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018785

88061361 - 88431643

370283

ENSAPLT00000036378

88053543 - 88431643

378101

ENSAPLT00000018287

88053543 - 88431643

378101

ENSAPLT00000033509

88053543 - 88431643

378101

ENSAPLT00000047318

88053543 - 88431643

378101

ENSAPLT00000006656

88053543 - 88431643

378101

ENSAPLT00000032874

88053543 - 88431643

378101

ENSAPLT00000040092

88053543 - 88418019

364477

ENSAPLT00000026769

88053543 - 88431643

378101

ENSAPLT00000037591

88053543 - 88431643

378101

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88323350_88326900_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: