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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88327140_88346934_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88327140 - 88346934
Intron Length:
19795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCACTTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCCCCTACTT
Flanking Amino Acid:
HGQRVEGLSERYNSYGSNSY
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.5
0.66
0.8
76.6
31.9
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
58
0.33
2
82.26
39.1

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000018785
88061361 - 88431643
370283