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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88328480_88341008_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88328480 - 88341008
Intron Length:
12529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
GGTGTGACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTGGTGTGACCT
Flanking Amino Acid:
AFEAEFKASSVEEEECEEED
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
69.7
36.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
60.9
0.24
1
55.3
44.6
Minor 5ss
32.6
-2
2.7
35.6
40.5
Minor BPS
42.2
-0.5
2.3
63.52
46.9

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000037591
88053543 - 88431643
378101
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000026769
88053543 - 88431643
378101