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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88341111_88346934_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88341111 - 88346934
Intron Length:
5824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGCA
5'SS Class:
major
3'SS Sequence:
CTCACTTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCCCCTACTT
Flanking Amino Acid:
EEEASRQVKARYNSYGSNSY
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
61.4
37.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.5
0.66
0.8
76.6
31.9
Minor 5ss
42.3
-0.8
3.2
57.2
47.1
Minor BPS
58
0.33
2
82.26
39.1

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000018287
88053543 - 88431643
378101