Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88347061 - 88358187

Intron Length:

11127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTACT

5'SS Class:

major

3'SS Sequence:

CCTTTTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

GAAATCTGATCT

Flanking Amino Acid:

LSPPQETKSDRPALGGLLTS

Intron Amino Acid Position:

441

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

78.3

35.6

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

88.5

0.87

0.6

Minor 5ss

40.8

-1

2.4

53.1

43.6

Minor BPS

46.9

-0.1

1.7

60.73

Associated Gene:

Gene:

FHOD3

Ensembl Gene ID:

ENSAPLG00000006413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018785

88061361 - 88431643

370283

ENSAPLT00000036378

88053543 - 88431643

378101

ENSAPLT00000047318

88053543 - 88431643

378101

ENSAPLT00000018287

88053543 - 88431643

378101

ENSAPLT00000033509

88053543 - 88431643

378101

ENSAPLT00000040092

88053543 - 88418019

364477

ENSAPLT00000006656

88053543 - 88431643

378101

ENSAPLT00000032874

88053543 - 88431643

378101

ENSAPLT00000026769

88053543 - 88431643

378101

ENSAPLT00000037591

88053543 - 88431643

378101

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88347061_88358187_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: