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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88358323_88361690_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88358323 - 88361690
Intron Length:
3368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGAACC
5'SS Class:
major
3'SS Sequence:
ATTCTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
TGCAACTTAACT
Flanking Amino Acid:
RIEREERNKFNRDYLDKREE
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.2
38
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
83.4
0.75
0.7
81.8
29.4
Minor 5ss
35.1
-1.7
3.2
44.7
36.9
Minor BPS
66.6
0.6
1.6
78.89
42.6

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000018287
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101
ENSAPLT00000006656
88053543 - 88431643
378101