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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88361742_88366184_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88361742 - 88366184
Intron Length:
4443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTATA
5'SS Class:
major
3'SS Sequence:
ATTTAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTTTCTTTACG
Flanking Amino Acid:
REELRQAREERYKYLERLAA
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
79.7
35.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
79.5
0.66
0.9
75.2
39
Minor 5ss
40.8
-1
2.6
51.4
45.1
Minor BPS
72.7
0.57
1.6
79.16
37.2

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000018287
88053543 - 88431643
378101
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101