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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8837282_8837398_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8837282 - 8837398
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
CTGCCCCAAATT
Flanking Amino Acid:
ATSLMLTETQVKIWFQNRRM
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
76.7
0.6
0.8
68.1
32
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
47.4
-0.1
2
65.71
45.1

Associated Gene:

Gene:
MNX1
Ensembl Gene ID:
ENSAPLG00000027559
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037966
8836495 - 8840331
3837