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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88373185_88376991_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88373185 - 88376991
Intron Length:
3807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TGTGTGATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CTGCCCTTGACT
Flanking Amino Acid:
EDKLTSDNETGPWSQTIQDA
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.7
39.4
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
73.8
0.54
1
66.4
44
Minor 5ss
35.6
-1.6
3.3
43.9
45.7
Minor BPS
72.8
0.8
1.3
80.72
41.3

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033509
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000037591
88053543 - 88431643
378101
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000018785
88061361 - 88431643
370283