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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8837560_8839314_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8837560 - 8839314
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
GTTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTGCTCTCACCC
Flanking Amino Acid:
MILPKMPDFNSQAQSNLLGK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
72.9
0.52
0.8
66.2
30
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
46.5
-0.2
1.8
55.21
43.2

Associated Gene:

Gene:
MNX1
Ensembl Gene ID:
ENSAPLG00000027559
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037966
8836495 - 8840331
3837