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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88383072_88391310_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88383072 - 88391310
Intron Length:
8239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCT
Flanking Amino Acid:
EYALNKEGIEKILTMIPTEE
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83
0.74
0.7
76.9
25
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
68.6
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018785
88061361 - 88431643
370283
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000018287
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000037591
88053543 - 88431643
378101