About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88391494_88395532_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88391494 - 88395532
Intron Length:
4039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACAGCCTTCATT
Flanking Amino Acid:
FKMDYEIVEKEVAEPLLDLK
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.5
0.53
1
69.9
35.2
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
52
0.14
1.9
66.59
44.6

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000037591
88053543 - 88431643
378101
ENSAPLT00000018785
88061361 - 88431643
370283
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000018287
88053543 - 88431643
378101