Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88396293 - 88404566

Intron Length:

8274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATTAT

U12 Branch Point Sequence:

TTTTCTATTATT

Flanking Amino Acid:

EIGAITRSAKVDFEQLQENL

Intron Amino Acid Position:

1184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

79.7

35.3

Major BPS

72.4

0.56

1.1

63.7

42.3

Major PPT

81.2

0.7

0.9

86.4

Minor 5ss

43.9

-0.7

2.8

58.4

46.1

Minor BPS

60.6

0.42

1.9

84.75

35.7

Associated Gene:

Gene:

FHOD3

Ensembl Gene ID:

ENSAPLG00000006413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018785

88061361 - 88431643

370283

ENSAPLT00000036378

88053543 - 88431643

378101

ENSAPLT00000018287

88053543 - 88431643

378101

ENSAPLT00000033509

88053543 - 88431643

378101

ENSAPLT00000047318

88053543 - 88431643

378101

ENSAPLT00000006656

88053543 - 88431643

378101

ENSAPLT00000032874

88053543 - 88431643

378101

ENSAPLT00000040092

88053543 - 88418019

364477

ENSAPLT00000026769

88053543 - 88431643

378101

ENSAPLT00000037591

88053543 - 88431643

378101

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88396293_88404566_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: