Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88404758 - 88406466

Intron Length:

1709

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGAAT

5'SS Class:

strong_major

3'SS Sequence:

CATTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

CATTCATTAACT

Flanking Amino Acid:

LKIVHRRIINRFHSFLLFMG

Intron Amino Acid Position:

1247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

81.1

32.6

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

81.8

0.71

0.9

72.9

41.9

Minor 5ss

33.3

-1.9

3.3

47.8

47.9

Minor BPS

74.7

0.85

1.6

86.69

38.7

Associated Gene:

Gene:

FHOD3

Ensembl Gene ID:

ENSAPLG00000006413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026769

88053543 - 88431643

378101

ENSAPLT00000037591

88053543 - 88431643

378101

ENSAPLT00000018785

88061361 - 88431643

370283

ENSAPLT00000036378

88053543 - 88431643

378101

ENSAPLT00000033509

88053543 - 88431643

378101

ENSAPLT00000047318

88053543 - 88431643

378101

ENSAPLT00000018287

88053543 - 88431643

378101

ENSAPLT00000032874

88053543 - 88431643

378101

ENSAPLT00000040092

88053543 - 88418019

364477

ENSAPLT00000006656

88053543 - 88431643

378101

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88404758_88406466_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: