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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88406660_88411986_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88406660 - 88411986
Intron Length:
5327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCGGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCCT
U12 Branch Point Sequence:
TTGTCCTTCTCT
Flanking Amino Acid:
NKTRGKMITDTDEEEDAESG
Intron Amino Acid Position:
1312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
33.6
-1
4.3
71.4
45.1
Major PPT
69.2
0.43
1.1
65
41.2
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
47.3
-0.1
3.6
83.61
43.6

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018287
88053543 - 88431643
378101
ENSAPLT00000037591
88053543 - 88431643
378101
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477