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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88406660_88414535_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88406660 - 88414535
Intron Length:
7876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
TCTTGGTTAAAA
Flanking Amino Acid:
NKTRGKMITDSGKFSSTSPP
Intron Amino Acid Position:
1270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
82.1
0.72
0.7
77.4
24.5
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
48.6
-0.1
2.5
68.09
44.4

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000018785
88061361 - 88431643
370283