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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88412011_88414535_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88412011 - 88414535
Intron Length:
2525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
TCTTGGTTAAAA
Flanking Amino Acid:
TDTDEEEDAESGKFSSTSPP
Intron Amino Acid Position:
1320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
75.6
34.9
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
82.1
0.72
0.7
77.4
24.5
Minor 5ss
47.4
-0.3
3.1
66.9
44.7
Minor BPS
48.6
-0.1
2.5
68.09
44.4

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000040092
88053543 - 88418019
364477
ENSAPLT00000018287
88053543 - 88431643
378101
ENSAPLT00000037591
88053543 - 88431643
378101
ENSAPLT00000006656
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101