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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88417181_88417981_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88417181 - 88417981
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCATCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GGCTTTTTGACT
Flanking Amino Acid:
RKRSRANRKSSFLGS*
Intron Amino Acid Position:
1621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
78.7
0.65
0.8
76.8
31.8
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
63.4
0.5
1.2
71.66
39.6

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040092
88053543 - 88418019
364477