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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88417181_88431560_F

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
88417181 - 88431560
Intron Length:
14380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CATGGCCACGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTGCCTACTT
Flanking Amino Acid:
RKRSRANRKSLRRTLKSGLT
Intron Amino Acid Position:
1431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
58.9
0.2
1
51
38
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
49.9
0.07
2.3
80.27
42.1

Associated Gene:

Gene:
FHOD3
Ensembl Gene ID:
ENSAPLG00000006413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026769
88053543 - 88431643
378101
ENSAPLT00000037591
88053543 - 88431643
378101
ENSAPLT00000018785
88061361 - 88431643
370283
ENSAPLT00000036378
88053543 - 88431643
378101
ENSAPLT00000033509
88053543 - 88431643
378101
ENSAPLT00000018287
88053543 - 88431643
378101
ENSAPLT00000032874
88053543 - 88431643
378101
ENSAPLT00000047318
88053543 - 88431643
378101
ENSAPLT00000006656
88053543 - 88431643
378101