About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8848025_8849859_F

Intron Information:

Intron Rank:
124435
Intron Class:
major
Intron Phase:
Intron Coordinates:
8848025 - 8849859
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CACTGCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTGCTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
75.6
29.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
70
0.45
1
62.1
38.2
Minor 5ss
34.3
-1.8
3.2
44.1
44.7
Minor BPS
44.8
-0.4
2.4
65.95
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017080
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039161
8847909 - 8851711
3803